Variant report

Variant	rs1525496
Chromosome Location	chr2:7385249-7385250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12613310	0.82[EUR][1000 genomes]
rs2140855	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4668532	0.92[EUR][1000 genomes]
rs4669168	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4669171	0.90[EUR][1000 genomes]
rs6431869	0.93[EUR][1000 genomes]
rs72277251	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7576780	0.83[ASN][1000 genomes]
rs7591725	0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7595799	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs876998	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7372000-7388400	Weak transcription	Pancreas	Pancrea
2	chr2:7378000-7388400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:7381600-7387000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:7382600-7385600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:7383200-7399800	Weak transcription	Spleen	Spleen
6	chr2:7384400-7385400	Weak transcription	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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