Variant report

Variant	rs1525574
Chromosome Location	chr7:53214203-53214204
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:53213709..53216589-chr7:53219355..53221202,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10277601	0.87[CHD][hapmap];1.00[JPT][hapmap]
rs13221708	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1357962	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1357963	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1357964	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6593066	0.84[ASN][1000 genomes]
rs6956222	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795012	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7796212	1.00[JPT][hapmap]
rs7808774	0.87[CHD][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:34 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv888034	chr7:53026365-53611898	Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3516146	chr7:53099945-53356180	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3516147	chr7:53099945-53356180	Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1017269	chr7:53142462-53605487	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv538846	chr7:53142462-53605487	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv831002	chr7:53153000-53349016	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv888035	chr7:53157899-53232207	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1849153	chr7:53181860-53235318	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1024001	chr7:53186040-53239605	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv888037	chr7:53187490-53248727	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv966792	chr7:53189284-53238955	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1024523	chr7:53190094-53237347	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv888038	chr7:53190508-53250378	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	esv1807221	chr7:53190607-53235318	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv437547	chr7:53198269-53244852	Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1015633	chr7:53203844-53238477	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv1025141	chr7:53204199-53225521	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1030982	chr7:53205852-53218900	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv981632	chr7:53209832-53219392	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv966926	chr7:53212523-53219392	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv2761134	chr7:53213312-53237564	Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3477225	chr7:53213664-53219934	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3477226	chr7:53213723-53219874	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3477227	chr7:53213723-53219874	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv20028	chr7:53213837-53217428	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv514421	chr7:53213906-53215334	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1034312	chr7:53213999-53232468	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv1027891	chr7:53213999-53239605	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
30	nsv442046	chr7:53214011-53218623	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv2421546	chr7:53214011-53218912	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
32	esv2761329	chr7:53214011-53222714	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv3692930	chr7:53214203-53232207	Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv517348	chr7:53214203-53239490	Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53214000-53214400	Enhancers	Brain Germinal Matrix	brain
2	chr7:53214000-53215400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:53214200-53214400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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