Variant report

Variant	rs1526026
Chromosome Location	chr2:39769681-39769682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1023591	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10865155	0.81[AFR][1000 genomes]
rs1474424	0.81[ASW][hapmap]
rs1547971	0.95[AFR][1000 genomes]
rs2056656	0.86[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4569458	1.00[AMR][1000 genomes]
rs4670934	0.91[ASW][hapmap]
rs6544223	0.91[ASW][hapmap]
rs7573067	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7582160	0.91[ASW][hapmap]
rs987990	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833858	chr2:39684483-39856498	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39761800-39769800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:39761800-39777600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:39762200-39785000	Weak transcription	HSMMtube	muscle
4	chr2:39763000-39773600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:39766200-39770000	Enhancers	Left Ventricle	heart
6	chr2:39767800-39775000	Weak transcription	Aorta	Aorta
7	chr2:39768200-39770200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:39768400-39770000	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr2:39768800-39770000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:39768800-39770400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr2:39768800-39770600	Weak transcription	Gastric	stomach
12	chr2:39769000-39774400	Weak transcription	Pancreas	Pancrea
13	chr2:39769200-39777000	Weak transcription	Fetal Heart	heart
14	chr2:39769400-39770000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr2:39769600-39772400	Weak transcription	HepG2	liver
16	chr2:39769600-39776600	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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