Variant report

Variant	rs1526075
Chromosome Location	chr7:145806780-145806781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:145805690..145807503-chr7:145809091..145811939,2	K562	blood:
2	chr7:145806708..145809039-chr7:145812340..145814652,2	K562	blood:

Variant related genes	Relation type
ENSG00000174469	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10248963	0.85[LWK][hapmap];0.86[YRI][hapmap]
rs11767161	0.82[CEU][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap]
rs11768250	0.85[ASN][1000 genomes]
rs11974152	0.82[YRI][hapmap]
rs1260124	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs12703790	0.82[YRI][hapmap]
rs17579058	0.86[TSI][hapmap]
rs2462603	0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2692361	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2693303	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4506126	0.82[YRI][hapmap]
rs4612252	0.85[JPT][hapmap]
rs6960982	0.85[LWK][hapmap];0.82[YRI][hapmap]
rs7778662	0.82[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap]
rs7794731	0.82[YRI][hapmap]
rs7794944	0.85[LWK][hapmap];0.82[YRI][hapmap]
rs7807672	0.82[CEU][hapmap];0.80[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.82[MEX][hapmap]
rs7811558	0.82[YRI][hapmap]
rs802551	0.86[JPT][hapmap];0.86[TSI][hapmap]
rs802578	0.86[JPT][hapmap]
rs802579	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608927	chr7:145803095-145882001	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1526075	EPHA1	cis	parietal	SCAN
rs1526075	TAS2R41	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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