Variant report

Variant	rs152620
Chromosome Location	chr5:14584609-14584610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14582585..14585698-chr5:14586097..14589501,3	MCF-7	breast:
2	chr5:14580610..14583664-chr5:14584270..14587652,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145569	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs152787	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7718540	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv1793651	chr5:14575698-14584695	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv1839029	chr5:14581556-14584695	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv1837510	chr5:14581556-14591004	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs152620	FAM105B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14581600-14585200	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr5:14582800-14585000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:14582800-14585800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr5:14582800-14588000	Weak transcription	GM12878-XiMat	blood
5	chr5:14582800-14589400	Weak transcription	Lung	lung
6	chr5:14583000-14585200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:14583000-14587200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:14583200-14585000	Enhancers	Primary T cells from cord blood	blood
9	chr5:14583200-14585000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr5:14583200-14585200	Weak transcription	Fetal Brain Female	brain
11	chr5:14583200-14585200	Enhancers	Pancreas	Pancrea
12	chr5:14583200-14585400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:14583200-14586000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr5:14583200-14586000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:14583200-14588000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:14583200-14588800	Weak transcription	Small Intestine	intestine
17	chr5:14583200-14588800	Weak transcription	Spleen	Spleen
18	chr5:14583200-14594400	Weak transcription	Adipose Nuclei	Adipose
19	chr5:14583400-14584800	Enhancers	Fetal Brain Male	brain
20	chr5:14583400-14585000	Weak transcription	Fetal Intestine Small	intestine
21	chr5:14583400-14586400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr5:14583400-14588800	Weak transcription	Colonic Mucosa	Colon
23	chr5:14583400-14591600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr5:14583400-14593600	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr5:14583600-14586000	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr5:14583800-14584800	Enhancers	Duodenum Mucosa	Duodenum
27	chr5:14583800-14585000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:14583800-14585800	Weak transcription	Fetal Intestine Large	intestine
29	chr5:14583800-14585800	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr5:14583800-14586800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr5:14583800-14587000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr5:14583800-14588800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:14584000-14585000	Active TSS	Hela-S3	cervix
34	chr5:14584000-14585800	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr5:14584000-14587200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr5:14584400-14584800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr5:14584400-14584800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:14584400-14585200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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