Variant report

Variant	rs1526267
Chromosome Location	chr9:102589745-102589746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102589376..102591940-chr9:102594219..102596621,2	MCF-7	breast:
2	chr9:102581880..102584384-chr9:102587876..102590490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119508	Chromatin interaction
ENSG00000237461	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1408471	0.84[EUR][1000 genomes]
rs2900223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743365	0.90[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102581800-102589800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
2	chr9:102585200-102590200	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
3	chr9:102586800-102609200	Weak transcription	Aorta	Aorta
4	chr9:102587000-102613800	Weak transcription	Hela-S3	cervix
5	chr9:102587200-102590200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:102587400-102590200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:102587400-102608200	Weak transcription	Psoas Muscle	Psoas
8	chr9:102587600-102590200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr9:102587600-102590800	Weak transcription	Pancreas	Pancrea
10	chr9:102587800-102590400	Weak transcription	NHLF	lung
11	chr9:102587800-102590800	Bivalent Enhancer	Fetal Brain Male	brain
12	chr9:102588000-102590000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:102588200-102589800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:102588200-102589800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:102588200-102590200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:102588200-102590400	Weak transcription	Gastric	stomach
17	chr9:102588200-102590400	Weak transcription	Right Ventricle	heart
18	chr9:102588200-102590400	Weak transcription	Spleen	Spleen
19	chr9:102588200-102591400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:102588200-102595400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr9:102589200-102591200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr9:102589200-102592600	Strong transcription	Left Ventricle	heart

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