Variant report

Variant	rs152639
Chromosome Location	chr5:14575174-14575175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14575023..14577429-chr5:14607385..14610126,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10060885	1.00[YRI][hapmap]
rs152640	0.80[AMR][1000 genomes]
rs152641	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs152642	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs152643	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs152644	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs31978	0.93[MEX][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv830211	chr5:14474675-14675776	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1032951	chr5:14529579-14667342	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	esv1796116	chr5:14572712-14582501	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14560600-14576000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14570200-14576600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:14573000-14575200	Enhancers	Primary B cells from cord blood	blood
4	chr5:14573200-14576200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr5:14573600-14575200	Enhancers	Right Atrium	heart
6	chr5:14574200-14575400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:14574200-14575600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr5:14574400-14575200	Enhancers	Adipose Nuclei	Adipose
9	chr5:14574400-14575200	Enhancers	Fetal Thymus	thymus
10	chr5:14574400-14575200	Enhancers	Pancreas	Pancrea
11	chr5:14574400-14575200	Enhancers	Spleen	Spleen
12	chr5:14574400-14575400	Enhancers	Lung	lung
13	chr5:14574400-14575400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr5:14574400-14575400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr5:14574400-14576000	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr5:14574400-14576200	Enhancers	Fetal Muscle Leg	muscle
17	chr5:14574600-14581200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:14574800-14575200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr5:14574800-14575200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:14574800-14575200	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr5:14574800-14575400	Enhancers	A549	lung
22	chr5:14574800-14575600	Enhancers	Placenta	Placenta
23	chr5:14574800-14576400	Enhancers	Duodenum Mucosa	Duodenum
24	chr5:14575000-14575200	Enhancers	Fetal Muscle Trunk	muscle
25	chr5:14575000-14575200	Enhancers	Gastric	stomach
26	chr5:14575000-14575200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr5:14575000-14575400	Enhancers	Fetal Heart	heart
28	chr5:14575000-14575400	Enhancers	Fetal Stomach	stomach
29	chr5:14575000-14576600	Enhancers	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links