Variant report

Variant	rs1526515
Chromosome Location	chr1:75675886-75675887
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10493560	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10493563	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11162740	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162743	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162745	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162747	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11162748	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077329	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12085115	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12087682	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1405308	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1405309	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1405310	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17096320	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096323	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096324	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096342	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096353	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096388	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096391	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096399	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096401	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096406	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17096504	1.00[ASN][1000 genomes]
rs17567259	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17567748	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1876035	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2221458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2462955	0.88[AMR][1000 genomes]
rs28817923	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28856993	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5021868	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60651982	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75671200-75678600	Weak transcription	Brain Germinal Matrix	brain
2	chr1:75673600-75677400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:75674200-75676400	Strong transcription	Fetal Brain Female	brain
4	chr1:75675000-75676400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:75675000-75679400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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