Variant report

Variant	rs1526855
Chromosome Location	chr12:105968328-105968329
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105949944..105952477-chr12:105966821..105969581,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10861460	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10861479	1.00[JPT][hapmap]
rs11112612	0.80[EUR][1000 genomes]
rs11112686	1.00[JPT][hapmap]
rs11615241	0.82[EUR][1000 genomes]
rs12809123	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1526856	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1543280	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694402	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2694403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2711740	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7133311	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832507	chr12:105821685-106005186	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1039068	chr12:105935786-106211250	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105956600-105979000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr12:105965000-105979000	Weak transcription	Aorta	Aorta
3	chr12:105967000-105971400	Weak transcription	Fetal Lung	lung
4	chr12:105967200-105970200	Enhancers	Fetal Heart	heart
5	chr12:105967400-105968400	Enhancers	Left Ventricle	heart
6	chr12:105968000-105968400	Enhancers	NH-A	brain
7	chr12:105968000-105968600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr12:105968000-105968600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr12:105968000-105968600	Enhancers	Right Ventricle	heart
10	chr12:105968000-105968600	Enhancers	HSMM	muscle
11	chr12:105968000-105968600	Enhancers	NHEK	skin
12	chr12:105968000-105968800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:105968000-105968800	Enhancers	HMEC	breast
14	chr12:105968000-105969000	Enhancers	Fetal Muscle Leg	muscle
15	chr12:105968000-105969000	Enhancers	Right Atrium	heart
16	chr12:105968000-105969200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr12:105968000-105969200	Enhancers	Spleen	Spleen
18	chr12:105968000-105969800	Enhancers	HSMMtube	muscle
19	chr12:105968000-105970600	Enhancers	Hela-S3	cervix
20	chr12:105968000-105970600	Enhancers	HUVEC	blood vessel
21	chr12:105968200-105968600	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr12:105968200-105968600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:105968200-105970200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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