Variant report

Variant	rs1528163
Chromosome Location	chr7:16074215-16074216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1295209	0.83[AFR][1000 genomes]
rs1406103	1.00[EUR][1000 genomes]
rs17150159	1.00[EUR][1000 genomes]
rs17169266	1.00[EUR][1000 genomes]
rs2049685	1.00[EUR][1000 genomes]
rs2530783	0.83[AFR][1000 genomes]
rs28569130	1.00[EUR][1000 genomes]
rs6966486	1.00[EUR][1000 genomes]
rs7788119	1.00[EUR][1000 genomes]
rs7797916	1.00[EUR][1000 genomes]
rs7797951	1.00[EUR][1000 genomes]
rs7798150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv517991	chr7:16042596-16104327	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1030165	chr7:16043678-16085488	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv518740	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv527277	chr7:16045794-16085019	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv606311	chr7:16045794-16085019	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16066800-16080000	Weak transcription	Right Atrium	heart
2	chr7:16069600-16079200	Weak transcription	Fetal Lung	lung
3	chr7:16072600-16075200	Enhancers	NHDF-Ad	bronchial
4	chr7:16073600-16075400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:16073800-16074600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:16073800-16074800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:16074000-16074800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:16074000-16075200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:16074200-16074600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:16074200-16074600	Enhancers	Osteobl	bone
11	chr7:16074200-16075000	Enhancers	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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