Variant report

Variant	rs1528431
Chromosome Location	chr2:151346377-151346378
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr2:151346300-151346470	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT1	chr2:151346163-151346859	Hela-S3	cervix:	n/a	chr2:151346483-151346492 chr2:151346481-151346495 chr2:151346484-151346493
3	STAT3	chr2:151346359-151346559	MCF10A-Er-Src	breast:	n/a	chr2:151346483-151346492 chr2:151346481-151346495 chr2:151346484-151346493

Variant related genes	Relation type
RND3	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3814395	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834414	chr2:151209374-151413309	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151344000-151348000	Weak transcription	Fetal Heart	heart
2	chr2:151344000-151352000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:151344200-151347600	Weak transcription	Osteobl	bone
4	chr2:151344200-151347800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:151344200-151347800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr2:151344200-151347800	Weak transcription	HUVEC	blood vessel
7	chr2:151344200-151348000	Weak transcription	Hela-S3	cervix
8	chr2:151344200-151348200	Weak transcription	NH-A	brain
9	chr2:151344200-151348400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:151344200-151348600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:151344200-151348600	Weak transcription	Liver	Liver
12	chr2:151344200-151351200	Weak transcription	NHEK	skin
13	chr2:151344200-151351800	Weak transcription	HMEC	breast
14	chr2:151344200-151352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr2:151344400-151347600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr2:151344400-151352000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:151344600-151349400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr2:151344600-151352000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:151344800-151347800	Enhancers	NHDF-Ad	bronchial
20	chr2:151345200-151347000	Enhancers	NHLF	lung
21	chr2:151345600-151347800	Weak transcription	A549	lung
22	chr2:151345600-151349600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:151345800-151346800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:151345800-151351200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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