Variant report
| Variant | rs1528998 |
|---|---|
| Chromosome Location | chr7:52790111-52790112 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:52785933..52787584-chr7:52789855..52792602,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10214958 | 0.84[ASN][1000 genomes] |
| rs10215086 | 0.83[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11238229 | 0.97[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11238230 | 0.97[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11974892 | 0.97[AFR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11977330 | 0.96[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11980050 | 0.95[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1230547 | 0.82[ASN][1000 genomes] |
| rs1230549 | 0.86[ASN][1000 genomes] |
| rs12540503 | 0.85[ASN][1000 genomes] |
| rs12668035 | 0.97[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1528997 | 0.96[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1528999 | 0.81[ASN][1000 genomes] |
| rs1978593 | 0.84[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28454662 | 0.84[ASN][1000 genomes] |
| rs28469789 | 0.83[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs28635243 | 0.82[ASN][1000 genomes] |
| rs35116687 | 0.87[AFR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35610141 | 0.85[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4418303 | 0.81[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4947747 | 0.85[ASN][1000 genomes] |
| rs60716577 | 0.96[ASN][1000 genomes] |
| rs67604530 | 0.85[ASN][1000 genomes] |
| rs6958886 | 0.89[AFR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7777290 | 0.83[AFR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7790364 | 0.82[ASN][1000 genomes] |
| rs7790712 | 0.85[ASN][1000 genomes] |
| rs7806644 | 0.86[ASN][1000 genomes] |
| rs9690428 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888026 | chr7:52588348-53013671 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv888027 | chr7:52588348-53190508 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1019722 | chr7:52767403-52800721 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv538842 | chr7:52767403-52800721 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:52785600-52804400 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
