Variant report

Variant	rs1530300
Chromosome Location	chr8:129919458-129919459
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12114722	0.88[ASN][1000 genomes]
rs13248652	0.95[ASN][1000 genomes]
rs13248827	0.95[ASN][1000 genomes]
rs13249571	0.88[ASN][1000 genomes]
rs13249953	0.96[EUR][1000 genomes]
rs13250479	0.95[ASN][1000 genomes]
rs13264072	0.95[ASN][1000 genomes]
rs13266086	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274006	0.95[ASN][1000 genomes]
rs1519845	0.88[ASN][1000 genomes]
rs1519846	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34426405	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029193	0.95[ASN][1000 genomes]
rs4733660	0.95[ASN][1000 genomes]
rs55847434	0.84[AFR][1000 genomes]
rs56330003	0.89[AFR][1000 genomes]
rs71522526	0.95[ASN][1000 genomes]
rs987524	0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1530300	FAM49B	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129913400-129922200	Weak transcription	Dnd41	blood
2	chr8:129918000-129922800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129918400-129919600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:129918800-129921400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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