Variant report

Variant	rs1531566
Chromosome Location	chr17:20893909-20893910
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:20893363..20896072-chr17:20898999..20901703,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1045162	0.81[ASN][1000 genomes]
rs1127814	0.81[ASN][1000 genomes]
rs12051606	0.91[ASN][1000 genomes]
rs12601292	0.90[ASN][1000 genomes]
rs12602058	0.83[ASN][1000 genomes]
rs12946114	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1542552	0.86[ASN][1000 genomes]
rs2291034	0.82[ASN][1000 genomes]
rs2886105	0.84[ASN][1000 genomes]
rs4985811	0.91[ASN][1000 genomes]
rs4985959	0.88[ASN][1000 genomes]
rs4985963	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56209912	0.82[ASN][1000 genomes]
rs59713572	0.83[ASN][1000 genomes]
rs6587111	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6618	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7209129	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7216921	0.87[ASN][1000 genomes]
rs880653	0.86[ASN][1000 genomes]
rs899340	0.87[ASN][1000 genomes]
rs9911289	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751619	chr17:20462908-20914156	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20848200-20896600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:20874600-20896600	Weak transcription	Spleen	Spleen
3	chr17:20881400-20896200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:20886800-20896400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr17:20887000-20896600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr17:20887200-20896000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:20891000-20897400	Weak transcription	Gastric	stomach
8	chr17:20892000-20895800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr17:20892400-20895800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr17:20892800-20894000	Enhancers	Fetal Muscle Trunk	muscle
11	chr17:20892800-20894200	Enhancers	Fetal Stomach	stomach
12	chr17:20892800-20895000	Enhancers	HepG2	liver
13	chr17:20893000-20894200	Enhancers	Fetal Muscle Leg	muscle
14	chr17:20893000-20894200	Bivalent Enhancer	Placenta	Placenta
15	chr17:20893000-20901600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:20893200-20894000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr17:20893200-20894000	Enhancers	HSMMtube	muscle
18	chr17:20893200-20895400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr17:20893400-20894200	Enhancers	Colon Smooth Muscle	Colon
20	chr17:20893400-20894200	Enhancers	Fetal Heart	heart
21	chr17:20893400-20895400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:20893600-20895400	Weak transcription	Pancreas	Pancrea
23	chr17:20893800-20894800	Weak transcription	Right Ventricle	heart
24	chr17:20893800-20895200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr17:20893800-20895600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:20893800-20895800	Weak transcription	Esophagus	oesophagus
27	chr17:20893800-20896600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr17:20893800-20901200	Weak transcription	Right Atrium	heart

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