Variant report

Variant	rs1531623
Chromosome Location	chr14:79668570-79668571
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10133101	0.89[JPT][hapmap]
rs10133387	0.89[JPT][hapmap]
rs1531625	0.83[AMR][1000 genomes]
rs1531626	0.83[AMR][1000 genomes]
rs17108972	0.83[AMR][1000 genomes]
rs17108981	0.83[AMR][1000 genomes]
rs2370936	1.00[EUR][1000 genomes]
rs7145315	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145504	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145670	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145792	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7150884	0.89[JPT][hapmap];1.00[YRI][hapmap]
rs7151352	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7151358	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7154580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7154594	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160468	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs716064	0.89[JPT][hapmap]
rs7160745	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79667400-79668800	Enhancers	Fetal Intestine Large	intestine
2	chr14:79668400-79671200	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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