Variant report
| Variant | rs1533130 |
|---|---|
| Chromosome Location | chr3:140907784-140907785 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1511384 | 0.90[ASN][1000 genomes] |
| rs1533128 | 0.84[AFR][1000 genomes] |
| rs1567561 | 0.94[ASN][1000 genomes] |
| rs1567562 | 0.94[ASN][1000 genomes] |
| rs1567563 | 0.84[AFR][1000 genomes] |
| rs1567564 | 0.84[AFR][1000 genomes] |
| rs2048457 | 0.83[AFR][1000 genomes] |
| rs2291041 | 0.83[CHD][hapmap] |
| rs28553347 | 0.91[ASN][1000 genomes] |
| rs34199471 | 0.80[AFR][1000 genomes] |
| rs57447258 | 0.86[ASN][1000 genomes] |
| rs59331345 | 0.90[ASN][1000 genomes] |
| rs60500817 | 0.90[ASN][1000 genomes] |
| rs6776299 | 0.84[AFR][1000 genomes] |
| rs6797811 | 0.84[AFR][1000 genomes] |
| rs73869513 | 0.90[ASN][1000 genomes] |
| rs73869530 | 0.93[ASN][1000 genomes] |
| rs7431366 | 0.84[AFR][1000 genomes] |
| rs7610372 | 0.88[ASN][1000 genomes] |
| rs7621186 | 0.90[ASN][1000 genomes] |
| rs7643005 | 0.83[GIH][hapmap] |
| rs9289621 | 0.80[AFR][1000 genomes] |
| rs9289623 | 0.80[AFR][1000 genomes] |
| rs9289625 | 0.85[LWK][hapmap];0.93[YRI][hapmap] |
| rs9289626 | 0.93[YRI][hapmap] |
| rs9815980 | 0.90[ASN][1000 genomes] |
| rs9859870 | 0.80[AFR][1000 genomes] |
| rs9990158 | 0.80[AFR][1000 genomes] |
| rs9990285 | 0.80[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877550 | chr3:140867094-140933231 | Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:140905800-140911400 | Weak transcription | Thymus | Thymus |
