Variant report

Variant	rs1533318
Chromosome Location	chr1:56095325-56095326
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1039296	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs10888938	0.82[EUR][1000 genomes]
rs1165472	0.88[YRI][hapmap]
rs1392140	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs1514140	0.90[CEU][hapmap]
rs2137830	0.82[EUR][1000 genomes]
rs2671258	0.91[CEU][hapmap]
rs2767501	0.91[CEU][hapmap]
rs6659204	0.88[YRI][hapmap];0.82[AFR][1000 genomes]
rs6700588	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs7518530	0.87[CEU][hapmap]
rs9436523	0.90[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461617	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv546303	chr1:56055190-56123510	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1014866	chr1:56059054-56129092	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56089000-56104000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:56090600-56098000	Weak transcription	Fetal Lung	lung
3	chr1:56092200-56097000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr1:56092400-56097000	Weak transcription	Hela-S3	cervix
5	chr1:56092600-56096000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:56092600-56098000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr1:56092800-56097000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:56093200-56098000	Weak transcription	Fetal Kidney	kidney
9	chr1:56093400-56095600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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