Variant report

Variant	rs1534587
Chromosome Location	chr8:35142956-35142957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 116 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10086433	0.86[ASN][1000 genomes]
rs10091291	0.89[ASN][1000 genomes]
rs10101937	0.89[ASN][1000 genomes]
rs10104660	0.87[ASN][1000 genomes]
rs10108964	0.86[ASN][1000 genomes]
rs10110454	0.85[ASN][1000 genomes]
rs10113220	0.86[ASN][1000 genomes]
rs10503979	0.83[ASN][1000 genomes]
rs10954985	0.86[ASN][1000 genomes]
rs10954986	0.86[ASN][1000 genomes]
rs10954987	0.83[ASN][1000 genomes]
rs1112204	1.00[ASN][1000 genomes]
rs11984839	0.87[ASN][1000 genomes]
rs11991431	0.90[ASN][1000 genomes]
rs11991965	0.86[ASN][1000 genomes]
rs11992772	0.86[ASN][1000 genomes]
rs11993717	1.00[ASN][1000 genomes]
rs11996793	0.85[ASN][1000 genomes]
rs11997743	0.83[ASN][1000 genomes]
rs12056409	0.86[ASN][1000 genomes]
rs12541372	0.86[ASN][1000 genomes]
rs12542495	0.86[ASN][1000 genomes]
rs12542606	0.98[ASN][1000 genomes]
rs12545700	1.00[ASN][1000 genomes]
rs12550658	0.86[ASN][1000 genomes]
rs12680114	0.86[ASN][1000 genomes]
rs13266519	0.83[ASN][1000 genomes]
rs13280010	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13282296	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13282746	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1358563	0.86[ASN][1000 genomes]
rs1358564	0.86[ASN][1000 genomes]
rs1406376	0.86[ASN][1000 genomes]
rs1528704	0.82[ASN][1000 genomes]
rs1528705	0.82[ASN][1000 genomes]
rs1528708	0.86[ASN][1000 genomes]
rs1528709	0.80[ASN][1000 genomes]
rs1528710	0.83[ASN][1000 genomes]
rs1528716	0.85[ASN][1000 genomes]
rs1528717	0.86[ASN][1000 genomes]
rs1528718	0.86[ASN][1000 genomes]
rs1528719	0.86[ASN][1000 genomes]
rs1534584	0.83[ASN][1000 genomes]
rs1554864	0.86[ASN][1000 genomes]
rs1590092	0.80[ASN][1000 genomes]
rs1590093	0.82[ASN][1000 genomes]
rs1609345	0.83[ASN][1000 genomes]
rs16883904	0.83[ASN][1000 genomes]
rs1919336	0.86[ASN][1000 genomes]
rs1919337	0.86[ASN][1000 genomes]
rs1919346	0.86[ASN][1000 genomes]
rs1919349	0.86[ASN][1000 genomes]
rs1919355	0.86[ASN][1000 genomes]
rs1950042	0.98[ASN][1000 genomes]
rs1980396	0.83[ASN][1000 genomes]
rs2204719	0.86[ASN][1000 genomes]
rs2405735	0.86[ASN][1000 genomes]
rs28388271	0.86[ASN][1000 genomes]
rs28395502	0.86[ASN][1000 genomes]
rs28412900	0.86[ASN][1000 genomes]
rs2950892	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2950893	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2950895	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2950897	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2950898	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2950901	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2950903	0.80[EUR][1000 genomes]
rs2950904	0.80[EUR][1000 genomes]
rs2950909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2950916	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2950924	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2980378	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2980391	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2980403	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2980406	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2980408	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3108619	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35169691	0.81[ASN][1000 genomes]
rs35365523	0.86[ASN][1000 genomes]
rs35985268	0.83[ASN][1000 genomes]
rs3744	1.00[ASN][1000 genomes]
rs4255132	1.00[ASN][1000 genomes]
rs4360290	0.86[ASN][1000 genomes]
rs4452796	0.83[ASN][1000 genomes]
rs4492371	0.83[ASN][1000 genomes]
rs4540403	0.89[ASN][1000 genomes]
rs4739302	0.86[ASN][1000 genomes]
rs4739304	0.86[ASN][1000 genomes]
rs4739399	0.98[ASN][1000 genomes]
rs4739400	0.91[ASN][1000 genomes]
rs4739402	0.86[ASN][1000 genomes]
rs5000056	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56114779	0.93[ASN][1000 genomes]
rs58886150	0.82[ASN][1000 genomes]
rs6468317	0.83[ASN][1000 genomes]
rs6991984	0.83[ASN][1000 genomes]
rs6992809	0.86[ASN][1000 genomes]
rs6997453	0.86[ASN][1000 genomes]
rs7006157	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7013157	0.83[ASN][1000 genomes]
rs7815710	0.98[ASN][1000 genomes]
rs7817194	0.86[ASN][1000 genomes]
rs7824855	0.87[ASN][1000 genomes]
rs7827072	0.86[ASN][1000 genomes]
rs7827646	0.83[ASN][1000 genomes]
rs7829022	0.81[ASN][1000 genomes]
rs7829585	0.83[ASN][1000 genomes]
rs7839131	0.83[ASN][1000 genomes]
rs871994	0.86[ASN][1000 genomes]
rs9297236	0.89[ASN][1000 genomes]
rs9297237	0.86[ASN][1000 genomes]
rs951515	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35124400-35145200	Weak transcription	Fetal Brain Female	brain
2	chr8:35124600-35151200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:35132400-35143800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:35134400-35144000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr8:35135800-35143800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:35135800-35143800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:35135800-35144000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:35135800-35148800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:35136000-35143800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:35136000-35143800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr8:35136600-35144000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:35136800-35144000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr8:35137400-35144000	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr8:35139800-35151200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr8:35141000-35144000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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