Variant report

Variant	rs1534649
Chromosome Location	chr8:19799641-19799642
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10104051	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.98[TSI][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2119692	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3779787	0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs3779788	1.00[CHB][hapmap];0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs56321069	0.99[ASN][1000 genomes]
rs7816032	0.81[CHB][hapmap];0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs8176337	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv498082	chr8:19722435-19873112	Bivalent Enhancer Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv32767	chr8:19740189-19873082	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19795400-19802000	Active TSS	Right Ventricle	heart
2	chr8:19796200-19799800	Active TSS	Fetal Brain Female	brain
3	chr8:19798200-19818400	Weak transcription	K562	blood
4	chr8:19798400-19800000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:19798400-19805800	Weak transcription	Aorta	Aorta
6	chr8:19798600-19799800	Flanking Active TSS	Adipose Nuclei	Adipose
7	chr8:19798600-19800600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:19798600-19800600	Weak transcription	Psoas Muscle	Psoas
9	chr8:19798600-19808400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:19798600-19813400	Weak transcription	Ovary	ovary
11	chr8:19798600-19824200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:19798800-19805800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:19799000-19813200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:19799200-19800800	Transcr. at gene 5' and 3'	Left Ventricle	heart
15	chr8:19799400-19799800	Enhancers	Fetal Heart	heart
16	chr8:19799400-19799800	Active TSS	Right Atrium	heart
17	chr8:19799400-19807200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:19799600-19800000	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr8:19799600-19800800	Bivalent Enhancer	Fetal Lung	lung
20	chr8:19799600-19805800	Weak transcription	Lung	lung

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