Variant report

Variant	rs1534934
Chromosome Location	chr6:149555146-149555147
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149548430..149549948-chr6:149553573..149556113,2	MCF-7	breast:
2	chr6:149353437..149355282-chr6:149555102..149556792,2	MCF-7	breast:
3	chr6:149544065..149545695-chr6:149554357..149556733,2	K562	blood:
4	chr6:149544065..149546954-chr6:149554614..149556733,2	K562	blood:
5	chr6:149553886..149556657-chr6:149559503..149563142,3	K562	blood:
6	chr6:149404784..149407716-chr6:149553769..149555747,2	MCF-7	breast:
7	chr6:149400077..149402541-chr6:149553088..149555803,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149542200-149560600	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:149545800-149557800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:149545800-149560200	Weak transcription	Right Atrium	heart
4	chr6:149546800-149556200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:149549600-149557200	Weak transcription	Fetal Stomach	stomach
6	chr6:149550000-149556000	Enhancers	Brain Hippocampus Middle	brain
7	chr6:149550200-149557800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:149551000-149555800	Weak transcription	Brain Germinal Matrix	brain
9	chr6:149551000-149557600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr6:149551600-149556400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:149551800-149558000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:149552000-149556400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:149552200-149555600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr6:149552200-149555600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:149552400-149555600	Enhancers	GM12878-XiMat	blood
16	chr6:149552400-149556800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:149552600-149555400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:149552600-149556600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:149552800-149555400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr6:149552800-149555600	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:149552800-149556800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:149553000-149555200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:149553000-149555400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr6:149553000-149555800	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:149553000-149555800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:149553000-149557000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr6:149553000-149557000	Enhancers	Fetal Thymus	thymus
28	chr6:149553200-149556800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:149553400-149555400	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr6:149553400-149557200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:149553600-149555400	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:149553600-149557000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:149553600-149557000	Enhancers	HMEC	breast
34	chr6:149553800-149555400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr6:149553800-149555400	Enhancers	Dnd41	blood
36	chr6:149553800-149556600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:149553800-149558200	Enhancers	HUVEC	blood vessel
38	chr6:149554000-149555200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr6:149554000-149555600	Enhancers	K562	blood
40	chr6:149554000-149555800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:149554000-149555800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr6:149554000-149555800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:149554000-149556600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:149554000-149557000	Enhancers	HSMM	muscle
45	chr6:149554000-149557200	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr6:149554000-149558200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr6:149554200-149555600	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr6:149554200-149555600	Flanking Active TSS	A549	lung
49	chr6:149554200-149555600	Enhancers	HSMMtube	muscle
50	chr6:149554200-149555800	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links