Variant report

Variant	rs1535603
Chromosome Location	chr6:21312555-21312556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs807856	0.83[AFR][1000 genomes]
rs807858	0.85[AFR][1000 genomes]
rs807862	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883473	chr6:21286834-21347410	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv462654	chr6:21296403-21322783	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv601091	chr6:21296403-21322783	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1535603	FAM65B	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:21309200-21314600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:21310400-21313000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:21310600-21313200	Weak transcription	Fetal Brain Male	brain
4	chr6:21311000-21313600	Weak transcription	Brain Germinal Matrix	brain
5	chr6:21312000-21312600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:21312000-21312600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:21312000-21314200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:21312200-21312600	Enhancers	Fetal Heart	heart
9	chr6:21312200-21313000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:21312400-21314200	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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