Variant report

Variant	rs1536159
Chromosome Location	chr1:59347543-59347544
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:59346337..59348680-chr1:59454325..59456505,2	K562	blood:
2	chr1:59244354..59252225-chr1:59338738..59357283,49	K562	blood:
3	chr1:59242511..59252251-chr1:59329388..59355607,72	K562	blood:
4	chr1:59281101..59282188-chr1:59346619..59347812,3	Hela-S3	cervix:
5	chr1:59248606..59251551-chr1:59345387..59348394,3	MCF-7	breast:
6	chr1:59334588..59339856-chr1:59347478..59351607,5	K562	blood:
7	chr1:59279129..59280859-chr1:59347455..59349368,2	K562	blood:
8	chr1:59280214..59283774-chr1:59346159..59349299,3	MCF-7	breast:
9	chr1:59347205..59349550-chr1:59349872..59353035,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000234807	Chromatin interaction
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10493253	0.87[CEU][hapmap];0.87[JPT][hapmap]
rs10789072	0.85[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11207319	0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11207321	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11207322	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11207323	0.87[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs11207325	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11207326	0.87[CEU][hapmap];0.87[JPT][hapmap]
rs12117564	0.87[CEU][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs12122077	0.88[CEU][hapmap];0.91[JPT][hapmap]
rs12142126	0.80[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12409909	0.80[EUR][1000 genomes]
rs2057596	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2716105	0.86[JPT][hapmap]
rs2716107	0.83[JPT][hapmap]
rs3015311	0.82[JPT][hapmap]
rs6658104	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6661505	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6677752	0.91[CEU][hapmap]
rs6697107	0.87[CEU][hapmap];0.87[JPT][hapmap];0.80[EUR][1000 genomes]
rs7528731	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005354	chr1:59283572-59535812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv829959	chr1:59340330-59503085	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59319800-59361400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:59340800-59348600	Weak transcription	Placenta	Placenta
3	chr1:59341000-59348400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr1:59341000-59348600	Weak transcription	Fetal Brain Male	brain
5	chr1:59341200-59348600	Weak transcription	HSMMtube	muscle
6	chr1:59341200-59350200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr1:59341400-59348600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr1:59341600-59348800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:59341800-59347600	Weak transcription	Brain Anterior Caudate	brain
10	chr1:59344800-59356000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:59345000-59348600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:59346200-59348200	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr1:59346200-59348800	Enhancers	Hela-S3	cervix
14	chr1:59346200-59348800	Enhancers	K562	blood
15	chr1:59346200-59350600	Enhancers	HepG2	liver
16	chr1:59346200-59353600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:59346200-59353800	Enhancers	Psoas Muscle	Psoas
18	chr1:59346400-59349800	Enhancers	HMEC	breast
19	chr1:59346400-59353400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:59346400-59354000	Enhancers	Fetal Intestine Small	intestine
21	chr1:59346600-59352000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:59346600-59352000	Enhancers	HUVEC	blood vessel
23	chr1:59346600-59354000	Enhancers	Fetal Intestine Large	intestine
24	chr1:59346800-59348000	Enhancers	Placenta Amnion	Placenta Amnion
25	chr1:59346800-59349000	Enhancers	NHLF	lung
26	chr1:59346800-59349800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr1:59346800-59351200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:59346800-59352000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr1:59346800-59353400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr1:59347000-59348000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr1:59347000-59348800	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr1:59347000-59349000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr1:59347000-59349000	Enhancers	Duodenum Mucosa	Duodenum
34	chr1:59347000-59349000	Enhancers	Esophagus	oesophagus
35	chr1:59347000-59349600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr1:59347000-59349800	Enhancers	Osteobl	bone
37	chr1:59347000-59350000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:59347000-59350000	Enhancers	NHEK	skin
39	chr1:59347000-59350400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:59347000-59351200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr1:59347000-59352000	Enhancers	Liver	Liver
42	chr1:59347000-59352000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr1:59347000-59352600	Enhancers	NH-A	brain
44	chr1:59347000-59352800	Enhancers	Left Ventricle	heart
45	chr1:59347000-59353200	Enhancers	Stomach Mucosa	stomach
46	chr1:59347000-59353400	Enhancers	Muscle Satellite Cultured Cells	--
47	chr1:59347000-59353800	Enhancers	Lung	lung
48	chr1:59347000-59353800	Enhancers	Right Atrium	heart
49	chr1:59347000-59354800	Enhancers	NHDF-Ad	bronchial
50	chr1:59347200-59347600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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