The 2.0 version of rSNPBase

Variant report

Variant rs1536440
Chromosome Location chr10:97295603-97295604
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:97280800-97301400 Enhancers Fetal Heart heart
2 chr10:97281600-97296400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr10:97282200-97304400 Weak transcription Brain Germinal Matrix brain
4 chr10:97283200-97296400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr10:97286200-97296000 Weak transcription Cortex derived primary cultured neurospheres brain
6 chr10:97289200-97299200 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr10:97289200-97309000 Enhancers Left Ventricle heart
8 chr10:97289400-97296200 Weak transcription HSMMtube muscle
9 chr10:97289400-97303800 Weak transcription HSMM muscle
10 chr10:97290000-97298600 Weak transcription Rectal Mucosa Donor 31 rectum
11 chr10:97290000-97301400 Enhancers Rectal Smooth Muscle rectum
12 chr10:97290400-97298800 Weak transcription Duodenum Mucosa Duodenum
13 chr10:97290600-97301800 Weak transcription Ovary ovary
14 chr10:97291200-97297200 Enhancers Fetal Adrenal Gland Adrenal Gland
15 chr10:97291200-97301000 Weak transcription Fetal Brain Female brain
16 chr10:97291800-97296600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
17 chr10:97291800-97308600 Enhancers Colon Smooth Muscle Colon
18 chr10:97292000-97295800 Weak transcription Placenta Placenta
19 chr10:97292000-97298400 Enhancers Brain Inferior Temporal Lobe brain
20 chr10:97292200-97299600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr10:97292400-97298600 Enhancers K562 blood
22 chr10:97292600-97299800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
23 chr10:97292600-97299800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr10:97292600-97300600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
25 chr10:97293000-97297400 Weak transcription Pancreas Pancrea
26 chr10:97293000-97298800 Weak transcription iPS-15b Cell Line embryonic stem cell
27 chr10:97293000-97299600 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr10:97293000-97299800 Weak transcription HUES48 Cell Line embryonic stem cell
29 chr10:97293000-97300400 Weak transcription H9 Cell Line embryonic stem cell
30 chr10:97293200-97297400 Enhancers Fetal Stomach stomach
31 chr10:97293200-97302800 Enhancers Breast Myoepithelial Primary Cells Breast
32 chr10:97293400-97295800 Weak transcription HepG2 liver
33 chr10:97293400-97305400 Enhancers Right Atrium heart
34 chr10:97293400-97306000 Enhancers Fetal Intestine Large intestine
35 chr10:97293600-97296200 Weak transcription Liver Liver
36 chr10:97293600-97296400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr10:97293600-97299800 Weak transcription Fetal Muscle Trunk muscle
38 chr10:97293600-97302000 Weak transcription Adipose Nuclei Adipose
39 chr10:97293800-97296000 Weak transcription Primary hematopoietic stem cells short term culture blood
40 chr10:97293800-97296600 Weak transcription Primary hematopoietic stem cells blood
41 chr10:97294200-97297600 Enhancers Brain Cingulate Gyrus brain
42 chr10:97294400-97295800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
43 chr10:97294400-97299200 Enhancers Fetal Lung lung
44 chr10:97294600-97298400 Enhancers Brain Anterior Caudate brain
45 chr10:97294800-97295800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr10:97294800-97295800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr10:97294800-97296000 Enhancers Small Intestine intestine
48 chr10:97294800-97296200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr10:97294800-97296400 Enhancers Fetal Intestine Small intestine
50 chr10:97294800-97296400 Weak transcription Lung lung

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Last update: Aug 31, 2015