Variant report

Variant	rs1536747
Chromosome Location	chr10:97056128-97056129
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97049651..97052657-chr10:97053278..97056357,3	MCF-7	breast:
2	chr10:97054091..97056343-chr10:97062077..97064550,2	K562	blood:
3	chr10:97038835..97040878-chr10:97054289..97056491,2	K562	blood:
4	chr10:97055600..97058139-chr10:97065773..97067717,2	K562	blood:
5	chr10:97055273..97057323-chr10:97068658..97070274,2	K562	blood:
6	chr10:97055747..97058721-chr10:97058965..97061918,2	MCF-7	breast:
7	chr10:97036138..97037977-chr10:97055615..97058500,2	K562	blood:
8	chr10:97047325..97053107-chr10:97053232..97056483,6	MCF-7	breast:
9	chr10:97054860..97057387-chr10:97070796..97073546,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000107438	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7918340	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529726	chr10:96632494-97106315	Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv15160	chr10:96942869-97074756	Bivalent Enhancer Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv552021	chr10:97053404-97071334	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97051200-97056800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:97054400-97056400	Flanking Active TSS	GM12878-XiMat	blood
3	chr10:97055400-97056400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
4	chr10:97055400-97056800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:97055400-97060000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr10:97055600-97056200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:97055600-97056400	Enhancers	Fetal Thymus	thymus
8	chr10:97055600-97056600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr10:97055600-97056800	Weak transcription	Left Ventricle	heart
10	chr10:97055600-97056800	Enhancers	K562	blood
11	chr10:97055600-97057000	Weak transcription	Right Atrium	heart
12	chr10:97055600-97057000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:97055600-97057200	Weak transcription	Psoas Muscle	Psoas
14	chr10:97055600-97057600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:97055600-97057800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:97055600-97057800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:97055600-97058000	Enhancers	Primary B cells from peripheral blood	blood
18	chr10:97055600-97063400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr10:97055600-97072800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr10:97055800-97056200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr10:97055800-97056200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr10:97055800-97057000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr10:97055800-97057000	Weak transcription	Spleen	Spleen
24	chr10:97055800-97057400	Enhancers	Primary hematopoietic stem cells	blood
25	chr10:97055800-97058000	Enhancers	Primary B cells from cord blood	blood
26	chr10:97055800-97058000	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:97055800-97063200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:97055800-97063200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr10:97055800-97063200	Weak transcription	Lung	lung
30	chr10:97055800-97063400	Weak transcription	NHEK	skin
31	chr10:97055800-97063800	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:97055800-97067600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:97056000-97056400	Weak transcription	Fetal Heart	heart
34	chr10:97056000-97056400	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links