Variant report

Variant	rs153682
Chromosome Location	chr5:52477252-52477253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs153620	0.81[AFR][1000 genomes]
rs30723	1.00[AMR][1000 genomes]
rs3212410	1.00[AMR][1000 genomes]
rs3212499	1.00[AMR][1000 genomes]
rs3212500	1.00[AMR][1000 genomes]
rs3212511	1.00[AMR][1000 genomes]
rs3212514	1.00[AMR][1000 genomes]
rs3212521	1.00[AMR][1000 genomes]
rs3212551	1.00[AMR][1000 genomes]
rs3212561	1.00[AMR][1000 genomes]
rs3212571	1.00[AMR][1000 genomes]
rs3212575	1.00[AMR][1000 genomes]
rs3212596	1.00[AMR][1000 genomes]
rs3212631	1.00[AMR][1000 genomes]
rs3212636	1.00[AMR][1000 genomes]
rs59603945	1.00[AMR][1000 genomes]
rs73756617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52476400-52477400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:52476400-52477400	Enhancers	NHDF-Ad	bronchial
3	chr5:52477200-52477600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:52477200-52479800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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