Variant report

Variant	rs1537017
Chromosome Location	chr9:117811315-117811316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117810151..117812770-chr9:117815287..117818009,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10759753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330363	0.86[JPT][hapmap]
rs1330364	0.87[JPT][hapmap]
rs13321	0.82[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1411456	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411461	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1547691	1.00[CEU][hapmap];0.86[JPT][hapmap];0.97[EUR][1000 genomes]
rs1547692	0.87[JPT][hapmap]
rs16932078	0.81[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs1854707	0.86[JPT][hapmap]
rs1888221	0.81[AMR][1000 genomes]
rs2009023	0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2104772	0.83[JPT][hapmap]
rs2210108	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2297180	0.86[JPT][hapmap]
rs3789870	0.95[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3789872	0.91[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs3789873	0.95[CEU][hapmap];0.87[JPT][hapmap];0.86[EUR][1000 genomes]
rs4460459	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6478127	0.86[JPT][hapmap]
rs6478128	0.86[JPT][hapmap]
rs7027148	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7030164	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7032224	0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs7875852	0.86[JPT][hapmap]
rs944223	1.00[CEU][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes]
rs944226	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs953288	0.86[JPT][hapmap]
rs955450	0.90[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117782400-117848200	Weak transcription	Brain Substantia Nigra	brain
2	chr9:117791600-117833200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:117792800-117815000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:117799200-117819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr9:117799400-117817000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:117800800-117825000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:117800800-117825200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr9:117801000-117812400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:117801000-117819200	Weak transcription	HMEC	breast
10	chr9:117801800-117820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:117802200-117848200	Weak transcription	Spleen	Spleen
12	chr9:117802600-117812400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:117803400-117812000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr9:117803400-117820000	Weak transcription	Aorta	Aorta
15	chr9:117803400-117820600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr9:117803600-117820200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:117803600-117825400	Weak transcription	Fetal Kidney	kidney
18	chr9:117804600-117812800	Weak transcription	NHEK	skin
19	chr9:117805800-117818800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:117806800-117816800	Strong transcription	Osteobl	bone
21	chr9:117807200-117816800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:117807400-117819600	Strong transcription	NHDF-Ad	bronchial
23	chr9:117807400-117819800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:117807600-117811400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:117807600-117817400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:117807800-117813800	Strong transcription	NH-A	brain
27	chr9:117808200-117812400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:117808600-117815000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr9:117809000-117825400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:117809200-117813800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr9:117809200-117821000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:117809400-117815000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr9:117809800-117815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:117810000-117817600	Weak transcription	Fetal Stomach	stomach
35	chr9:117810200-117811400	Weak transcription	Fetal Lung	lung
36	chr9:117810200-117811800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr9:117810200-117811800	Strong transcription	Stomach Smooth Muscle	stomach
38	chr9:117810200-117817600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr9:117810600-117825000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr9:117810800-117814400	Weak transcription	NHLF	lung
41	chr9:117811000-117816600	Weak transcription	Colon Smooth Muscle	Colon
42	chr9:117811200-117811400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr9:117811200-117812400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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