Variant report

Variant	rs1537885
Chromosome Location	chr9:71372114-71372115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:71363342..71365410-chr9:71370725..71372503,2	K562	blood:
2	chr9:71370018..71372920-chr9:71376238..71377974,2	K562	blood:
3	chr9:71365153..71367262-chr9:71371019..71372554,2	MCF-7	breast:
4	chr9:71370631..71372929-chr9:71394149..71395815,2	K562	blood:
5	chr9:71370631..71372776-chr9:71394039..71395649,2	K562	blood:

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10511964	0.84[MEX][hapmap]
rs10511965	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10735625	0.92[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];0.84[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10746925	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12345874	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12551225	0.82[EUR][1000 genomes]
rs12555750	0.82[EUR][1000 genomes]
rs1336492	0.83[GIH][hapmap];0.82[TSI][hapmap]
rs17391162	0.95[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17391596	0.87[CEU][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17391840	0.81[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs17482181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17482797	0.87[MEX][hapmap]
rs17483533	0.87[MEX][hapmap];0.83[TSI][hapmap]
rs58220469	0.82[ASN][1000 genomes]
rs59031138	0.84[ASN][1000 genomes]
rs59550441	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61221055	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6560397	0.80[MEX][hapmap]
rs66460517	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67047473	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67457572	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7018552	1.00[CEU][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7031263	0.92[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.84[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7044460	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7049222	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs72717927	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72717935	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72717955	0.81[EUR][1000 genomes]
rs7871676	0.83[MEX][hapmap]
rs8114	0.84[CHB][hapmap]
rs883951	0.82[MEX][hapmap]
rs945575	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs950785	0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs952590	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs972058	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs972059	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1537885	PIP5K1B	cis	Artery Tibial	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71365000-71372800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr9:71366000-71372800	Weak transcription	Primary B cells from cord blood	blood
3	chr9:71366400-71373400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr9:71370400-71372600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:71370800-71372600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr9:71371000-71372800	Weak transcription	Fetal Intestine Large	intestine
7	chr9:71371000-71372800	Weak transcription	Right Atrium	heart
8	chr9:71371000-71372800	Weak transcription	GM12878-XiMat	blood
9	chr9:71371000-71375200	Weak transcription	Fetal Heart	heart
10	chr9:71371000-71375400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:71371200-71384600	Weak transcription	Stomach Mucosa	stomach
12	chr9:71371400-71374200	Weak transcription	K562	blood
13	chr9:71371400-71375400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:71371600-71372400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:71371800-71372200	Weak transcription	HepG2	liver
16	chr9:71371800-71372600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:71371800-71372800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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