Variant report

Variant	rs1538180
Chromosome Location	chrX:110188352-110188353
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817233	chrX:109693720-110244649	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv432353	chrX:110098562-110188612	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv933069	chrX:110117241-110257564	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv532899	chrX:110117241-110419226	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv428712	chrX:110184832-110358638	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:110182600-110188600	Weak transcription	Stomach Mucosa	stomach
2	chrX:110187000-110188400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chrX:110187000-110188600	Bivalent/Poised TSS	Fetal Kidney	kidney
4	chrX:110187000-110188800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chrX:110187000-110189800	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chrX:110187000-110190200	Active TSS	Brain Germinal Matrix	brain
7	chrX:110187200-110188400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chrX:110187200-110188400	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
9	chrX:110187200-110188600	Active TSS	NH-A	brain
10	chrX:110187200-110188800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chrX:110187200-110188800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chrX:110187200-110189000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chrX:110187200-110189000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chrX:110187400-110188400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
15	chrX:110187400-110188400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chrX:110187400-110188400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
17	chrX:110187400-110188400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chrX:110187400-110188400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chrX:110187400-110188400	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
20	chrX:110187400-110188400	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chrX:110187400-110188400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
22	chrX:110187400-110188400	Bivalent/Poised TSS	Fetal Stomach	stomach
23	chrX:110187400-110188600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
24	chrX:110187400-110188600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chrX:110187400-110188600	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chrX:110187400-110188600	Active TSS	Brain Substantia Nigra	brain
27	chrX:110187400-110188600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
28	chrX:110187400-110188800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
29	chrX:110187400-110188800	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
30	chrX:110187400-110188800	Active TSS	Brain Anterior Caudate	brain
31	chrX:110187400-110188800	Active TSS	Brain Cingulate Gyrus	brain
32	chrX:110187400-110188800	Active TSS	Pancreas	Pancrea
33	chrX:110187400-110189000	Active TSS	H9 Cell Line	embryonic stem cell
34	chrX:110187400-110189000	Active TSS	Brain Angular Gyrus	brain
35	chrX:110187600-110188600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
36	chrX:110187600-110188800	Active TSS	Brain Inferior Temporal Lobe	brain
37	chrX:110187600-110188800	Active TSS	Fetal Brain Male	brain
38	chrX:110187800-110188400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chrX:110187800-110188400	Active TSS	Gastric	stomach
40	chrX:110187800-110188400	Bivalent Enhancer	Lung	lung
41	chrX:110187800-110188600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chrX:110187800-110188600	Active TSS	HSMMtube	muscle
43	chrX:110187800-110188800	Bivalent/Poised TSS	HMEC	breast
44	chrX:110188000-110188400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chrX:110188000-110188400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chrX:110188000-110188400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
47	chrX:110188000-110188600	Active TSS	Brain Hippocampus Middle	brain
48	chrX:110188200-110188400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chrX:110188200-110188400	Bivalent Enhancer	Fetal Lung	lung
50	chrX:110188200-110188400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle

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