Variant report

Variant	rs153850
Chromosome Location	chr5:94190699-94190700
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94190382..94191968-chr5:94194901..94196604,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs152287	0.95[CEU][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes]
rs153851	0.82[CEU][hapmap]
rs153852	0.82[CEU][hapmap]
rs153898	0.90[CEU][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
7	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
10	chr5:94186200-94194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
12	chr5:94186600-94191000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:94188800-94191400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr5:94189000-94192000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr5:94189000-94193000	Strong transcription	HUVEC	blood vessel
16	chr5:94189200-94191000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:94189400-94191000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:94189600-94191000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:94189600-94191200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr5:94189800-94190800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr5:94189800-94191000	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr5:94189800-94191000	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr5:94189800-94191400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:94189800-94192200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:94189800-94199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:94190200-94192400	Weak transcription	Primary hematopoietic stem cells	blood
27	chr5:94190200-94196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr5:94190600-94190800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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