Variant report

Variant	rs15388
Chromosome Location	chr4:129191383-129191384
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:129190816..129193494-chr4:129203702..129205862,2	MCF-7	breast:
2	chr4:129191253..129196346-chr4:129207111..129210585,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164040	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10001690	1.00[CHD][hapmap]
rs13106597	1.00[CHD][hapmap]
rs4417984	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390887	chr4:128932563-129207255	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129173800-129207400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:129184600-129206200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:129187800-129206400	Weak transcription	Ovary	ovary
4	chr4:129187800-129206600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:129187800-129207200	Weak transcription	Aorta	Aorta
6	chr4:129188200-129195200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:129188400-129191400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:129188400-129191400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr4:129188600-129205800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:129188800-129191400	Weak transcription	HSMMtube	muscle
11	chr4:129188800-129191600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:129188800-129191800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr4:129188800-129203600	Weak transcription	Stomach Mucosa	stomach
14	chr4:129188800-129206200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:129189000-129191400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:129189000-129191400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:129189000-129192000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:129189000-129200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr4:129189000-129205600	Weak transcription	Fetal Lung	lung
20	chr4:129189200-129191400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:129189200-129192200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr4:129189200-129193400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:129189400-129198800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:129189400-129206000	Weak transcription	Fetal Stomach	stomach
25	chr4:129189400-129207200	Weak transcription	Thymus	Thymus
26	chr4:129189600-129200800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:129189800-129191400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr4:129189800-129192000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr4:129189800-129194000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:129189800-129195400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:129189800-129205400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:129190000-129192000	Weak transcription	Right Ventricle	heart
33	chr4:129190000-129192200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr4:129190000-129193400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:129190000-129195200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:129190000-129195200	Strong transcription	NHDF-Ad	bronchial
37	chr4:129190000-129195400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:129190000-129197000	Weak transcription	Pancreas	Pancrea
39	chr4:129190000-129206000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr4:129190200-129191800	Weak transcription	Hela-S3	cervix
41	chr4:129190200-129192200	Strong transcription	HSMM	muscle
42	chr4:129190200-129193600	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr4:129190200-129193800	Weak transcription	Fetal Heart	heart
44	chr4:129190200-129195200	Strong transcription	Osteobl	bone
45	chr4:129190200-129195400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:129190200-129195600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr4:129190200-129200400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:129190400-129193000	Strong transcription	A549	lung
49	chr4:129190400-129194000	Strong transcription	Adipose Nuclei	Adipose
50	chr4:129190400-129201000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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