Variant report

Variant	rs153925
Chromosome Location	chr5:14755095-14755096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:14754799-14755524	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14753133..14755673-chr5:14756895..14759517,2	MCF-7	breast:

Variant related genes	Relation type
ANKH	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10036729	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10052744	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs153921	0.87[EUR][1000 genomes]
rs153923	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs153924	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs153926	0.87[EUR][1000 genomes]
rs1697126	0.84[EUR][1000 genomes]
rs17250963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs187483	0.83[EUR][1000 genomes]
rs59068551	0.83[EUR][1000 genomes]
rs697565	0.86[EUR][1000 genomes]
rs697571	0.84[EUR][1000 genomes]
rs697572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72732799	0.87[EUR][1000 genomes]
rs72732801	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14725400-14758600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:14727200-14757000	Weak transcription	NHLF	lung
3	chr5:14729200-14791000	Weak transcription	Small Intestine	intestine
4	chr5:14730000-14758400	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr5:14736600-14760000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr5:14736800-14757400	Strong transcription	Duodenum Mucosa	Duodenum
7	chr5:14737800-14759200	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:14737800-14759400	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr5:14740800-14755200	Weak transcription	NHDF-Ad	bronchial
10	chr5:14741600-14767800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr5:14742800-14756600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr5:14742800-14758400	Strong transcription	Primary T cells from cord blood	blood
13	chr5:14743000-14756800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr5:14744200-14757400	Strong transcription	Dnd41	blood
15	chr5:14744600-14758600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:14744600-14761800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:14744600-14775800	Weak transcription	NH-A	brain
18	chr5:14744800-14757200	Weak transcription	HUVEC	blood vessel
19	chr5:14744800-14776000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr5:14745000-14756200	Strong transcription	Osteobl	bone
21	chr5:14745800-14757800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr5:14746000-14790200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr5:14746200-14760200	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:14746200-14762400	Weak transcription	GM12878-XiMat	blood
25	chr5:14746200-14775800	Weak transcription	Spleen	Spleen
26	chr5:14746400-14768000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr5:14746600-14776000	Weak transcription	Placenta	Placenta
28	chr5:14748800-14760000	Weak transcription	Fetal Muscle Trunk	muscle
29	chr5:14749000-14776000	Weak transcription	Esophagus	oesophagus
30	chr5:14750000-14758400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr5:14751000-14755600	Weak transcription	Brain Germinal Matrix	brain
32	chr5:14751000-14758600	Strong transcription	Fetal Intestine Small	intestine
33	chr5:14751200-14755400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr5:14751200-14760400	Weak transcription	HSMMtube	muscle
35	chr5:14751200-14762400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr5:14751400-14755400	Weak transcription	Fetal Stomach	stomach
37	chr5:14751400-14758200	Weak transcription	Colonic Mucosa	Colon
38	chr5:14751400-14761600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr5:14751400-14775800	Weak transcription	Pancreas	Pancrea
40	chr5:14751600-14768000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:14751800-14756000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr5:14752200-14755800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr5:14752200-14776600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:14752400-14756200	Strong transcription	Hela-S3	cervix
45	chr5:14752600-14755400	Weak transcription	Fetal Intestine Large	intestine
46	chr5:14752600-14756800	Strong transcription	Thymus	Thymus
47	chr5:14753000-14755200	Enhancers	Fetal Brain Male	brain
48	chr5:14753000-14755800	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr5:14753000-14756400	Strong transcription	Adipose Nuclei	Adipose
50	chr5:14753000-14756600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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