Variant report

Variant	rs1539452
Chromosome Location	chr1:220007508-220007509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1776017	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72738789	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72740948	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006393	chr1:219925261-220126458	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1067840	chr1:219990803-220091941	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220006000-220008000	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:220006200-220007800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:220006200-220008200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:220006400-220007600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:220006400-220007800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr1:220006600-220007800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr1:220006600-220007800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr1:220006800-220007800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr1:220007000-220009000	Enhancers	H1 Cell Line	embryonic stem cell
10	chr1:220007000-220013400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:220007200-220009000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:220007400-220008600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:220007400-220008800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:220007400-220008800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:220007400-220012600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr1:220007400-220012600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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