Variant report

Variant	rs1539561
Chromosome Location	chr1:112876865-112876866
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1891704	1.00[AMR][1000 genomes]
rs1936048	0.91[AFR][1000 genomes]
rs2253982	1.00[AMR][1000 genomes]
rs2488781	1.00[AMR][1000 genomes]
rs2492487	1.00[AMR][1000 genomes]
rs2995766	0.80[AFR][1000 genomes]
rs2995771	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv508526	chr1:112839396-112915215	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112875000-112879600	Enhancers	HMEC	breast
2	chr1:112875200-112880000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:112875800-112877800	Weak transcription	Adipose Nuclei	Adipose
4	chr1:112876000-112878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:112876200-112877800	Weak transcription	HSMM	muscle
6	chr1:112876200-112879800	Weak transcription	HSMMtube	muscle
7	chr1:112876400-112877800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:112876600-112877000	Enhancers	Fetal Muscle Trunk	muscle
9	chr1:112876600-112877800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:112876600-112878000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr1:112876800-112877800	Weak transcription	NHEK	skin
12	chr1:112876800-112879600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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