Variant report

Variant	rs1540141
Chromosome Location	chr11:15254138-15254139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1540144	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1619444	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1714340	0.86[EUR][1000 genomes]
rs1792542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1792543	0.88[EUR][1000 genomes]
rs1792561	0.82[EUR][1000 genomes]
rs1792565	0.80[EUR][1000 genomes]
rs1792567	0.81[EUR][1000 genomes]
rs1792568	0.81[EUR][1000 genomes]
rs1792569	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1996554	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897007	chr11:14991411-15260124	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv530217	chr11:14991411-15275034	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv897010	chr11:15219258-15279421	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv975323	chr11:15249916-15262360	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15234400-15272000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:15242000-15269000	Weak transcription	Pancreas	Pancrea
3	chr11:15245000-15271200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr11:15245400-15259600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:15246800-15254200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:15250600-15254800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr11:15250600-15261800	Weak transcription	Aorta	Aorta
8	chr11:15252200-15257000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:15252600-15255200	Weak transcription	Fetal Stomach	stomach
10	chr11:15253600-15261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:15253600-15263200	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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