Variant report

Variant	rs15402
Chromosome Location	chr5:108532513-108532514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108061485..108063764-chr5:108531094..108533966,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4957806	0.90[ASN][1000 genomes]
rs4957807	0.90[ASN][1000 genomes]
rs62376813	0.88[ASN][1000 genomes]
rs6870061	0.89[ASN][1000 genomes]
rs6870080	0.90[ASN][1000 genomes]
rs6870224	0.90[ASN][1000 genomes]
rs6870394	0.90[ASN][1000 genomes]
rs6891839	0.90[ASN][1000 genomes]
rs72793026	0.89[ASN][1000 genomes]
rs7710527	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027163	chr5:108445447-108839913	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv2756048	chr5:108448101-108542101	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1792067	chr5:108521224-108542526	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv599338	chr5:108528729-108675737	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108481600-108535000	Weak transcription	Left Ventricle	heart
2	chr5:108496000-108532800	Weak transcription	Ovary	ovary
3	chr5:108503600-108540400	Weak transcription	Psoas Muscle	Psoas
4	chr5:108505000-108535200	Weak transcription	Pancreas	Pancrea
5	chr5:108517200-108533000	Weak transcription	Fetal Kidney	kidney
6	chr5:108522600-108538000	Weak transcription	Aorta	Aorta
7	chr5:108524800-108533600	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:108524800-108535200	Weak transcription	Fetal Brain Male	brain
9	chr5:108525200-108535200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr5:108526800-108533200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:108527200-108534600	Weak transcription	HSMM	muscle
12	chr5:108527400-108534800	Weak transcription	HMEC	breast
13	chr5:108527400-108535000	Weak transcription	HSMMtube	muscle
14	chr5:108527800-108542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:108528600-108534600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:108530200-108534800	Weak transcription	Adipose Nuclei	Adipose
17	chr5:108530400-108532800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr5:108530600-108532600	Weak transcription	Fetal Intestine Small	intestine
19	chr5:108531600-108532800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:108531600-108533400	Enhancers	HUVEC	blood vessel
21	chr5:108531600-108534400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:108531800-108532800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:108531800-108532800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:108531800-108532800	Enhancers	Hela-S3	cervix
25	chr5:108532000-108532600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr5:108532000-108532600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:108532000-108532800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr5:108532000-108532800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr5:108532000-108532800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr5:108532000-108532800	Enhancers	NHDF-Ad	bronchial
31	chr5:108532200-108534400	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr5:108532200-108540600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:108532400-108532800	Weak transcription	Fetal Lung	lung
34	chr5:108532400-108532800	Weak transcription	Fetal Stomach	stomach

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