Variant report
| Variant | rs1540352 |
|---|---|
| Chromosome Location | chr7:123836711-123836712 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:123831215..123834042-chr7:123835475..123837132,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10487813 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1079911 | 0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10953992 | 0.80[ASN][1000 genomes] |
| rs10953993 | 0.80[ASN][1000 genomes] |
| rs1541475 | 1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1541476 | 0.90[ASN][1000 genomes] |
| rs17554581 | 0.90[ASN][1000 genomes] |
| rs1860484 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1987680 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2191459 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6466895 | 0.85[ASN][1000 genomes] |
| rs6466896 | 0.90[ASN][1000 genomes] |
| rs67432719 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6944209 | 0.80[ASN][1000 genomes] |
| rs6948425 | 0.90[ASN][1000 genomes] |
| rs6967086 | 0.90[ASN][1000 genomes] |
| rs723881 | 0.89[ASN][1000 genomes] |
| rs7782625 | 0.90[ASN][1000 genomes] |
| rs7789434 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7802495 | 0.82[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7809024 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv608338 | chr7:123787673-124063498 | Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019824 | chr7:123817167-123926854 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016498 | chr7:123829760-123954337 | Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv539109 | chr7:123829760-123954337 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv1818748 | chr7:123829886-124039708 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:123830800-123842200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr7:123836600-123836800 | Enhancers | Fetal Lung | lung |
