Variant report

Variant	rs1540869
Chromosome Location	chr15:55296700-55296701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1915205	1.00[EUR][1000 genomes]
rs4278688	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59104728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7169189	1.00[EUR][1000 genomes]
rs73407829	1.00[EUR][1000 genomes]
rs73419725	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv569520	chr15:55170999-55327439	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55295600-55296800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:55296000-55296800	Enhancers	Brain Hippocampus Middle	brain
3	chr15:55296000-55297000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:55296200-55296800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:55296200-55296800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:55296200-55296800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:55296200-55296800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:55296200-55296800	Enhancers	Right Atrium	heart
9	chr15:55296200-55297000	Enhancers	Brain Anterior Caudate	brain
10	chr15:55296200-55297000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:55296200-55297000	ZNF genes & repeats	Pancreas	Pancrea
12	chr15:55296400-55296800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr15:55296400-55296800	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:55296400-55296800	Enhancers	Brain Substantia Nigra	brain
15	chr15:55296400-55296800	Enhancers	Colon Smooth Muscle	Colon
16	chr15:55296400-55296800	Enhancers	Psoas Muscle	Psoas
17	chr15:55296400-55296800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr15:55296400-55296800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr15:55296400-55297000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:55296600-55296800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:55296600-55297000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:55296600-55297000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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