Variant report

Variant	rs1540900
Chromosome Location	chr22:29490148-29490149
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:29219559..29221242-chr22:29488785..29491487,2	MCF-7	breast:
2	chr22:29488253..29490159-chr22:29547499..29549684,2	K562	blood:
3	chr22:29468314..29470474-chr22:29489688..29492570,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183762	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3761426	1.00[ASW][hapmap]
rs3765303	1.00[ASW][hapmap]
rs9613855	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29475600-29491000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr22:29475600-29505600	Weak transcription	Spleen	Spleen
3	chr22:29476600-29491000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr22:29476800-29494800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr22:29478800-29490200	Weak transcription	Thymus	Thymus
6	chr22:29478800-29498200	Weak transcription	Brain Germinal Matrix	brain
7	chr22:29480600-29498000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr22:29480800-29492400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr22:29483400-29550200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr22:29485800-29492200	Weak transcription	K562	blood
11	chr22:29486000-29491000	Weak transcription	Colonic Mucosa	Colon
12	chr22:29486000-29492600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr22:29486200-29490800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr22:29486200-29491000	Weak transcription	Fetal Brain Female	brain
15	chr22:29486600-29494800	Weak transcription	NHEK	skin
16	chr22:29486600-29519000	Weak transcription	Fetal Brain Male	brain
17	chr22:29487200-29490200	Enhancers	Fetal Muscle Leg	muscle
18	chr22:29487600-29490200	Enhancers	Fetal Stomach	stomach
19	chr22:29487600-29490400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr22:29487600-29491000	Enhancers	Fetal Lung	lung
21	chr22:29487600-29491000	Enhancers	Ovary	ovary
22	chr22:29487800-29490400	Enhancers	Liver	Liver
23	chr22:29487800-29490400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr22:29488000-29490400	Enhancers	Colon Smooth Muscle	Colon
25	chr22:29488400-29490200	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr22:29488400-29492400	Weak transcription	Right Ventricle	heart
27	chr22:29488400-29521200	Weak transcription	Lung	lung
28	chr22:29488600-29494800	Weak transcription	Placenta	Placenta
29	chr22:29488800-29491000	Weak transcription	Gastric	stomach
30	chr22:29488800-29491000	Weak transcription	Right Atrium	heart
31	chr22:29488800-29492400	Weak transcription	Pancreas	Pancrea
32	chr22:29489000-29490400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr22:29489000-29490400	Enhancers	HSMMtube	muscle
34	chr22:29489000-29490800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr22:29489000-29492600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr22:29489000-29494800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr22:29489200-29490200	Enhancers	Fetal Kidney	kidney
38	chr22:29489200-29490200	Enhancers	HSMM	muscle
39	chr22:29489200-29490400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr22:29489200-29490400	Flanking Active TSS	NHDF-Ad	bronchial
41	chr22:29489200-29490400	Enhancers	NHLF	lung
42	chr22:29489200-29494800	Weak transcription	Adipose Nuclei	Adipose
43	chr22:29489400-29490200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr22:29489400-29490200	Enhancers	Brain Hippocampus Middle	brain
45	chr22:29489400-29490200	Enhancers	Hela-S3	cervix
46	chr22:29489400-29490200	Enhancers	NH-A	brain
47	chr22:29489400-29490400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr22:29489400-29490400	Enhancers	Muscle Satellite Cultured Cells	--
49	chr22:29489400-29490400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr22:29489400-29490400	Enhancers	Psoas Muscle	Psoas

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