Variant report

Variant	rs1540920
Chromosome Location	chr6:163613941-163613942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2762628	chr6:163572148-163620903	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163602600-163622600	Weak transcription	Right Ventricle	heart
2	chr6:163608000-163632800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:163608400-163616400	Enhancers	Brain Cingulate Gyrus	brain
4	chr6:163608800-163616200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:163611200-163614200	Enhancers	Fetal Heart	heart
6	chr6:163611400-163616400	Enhancers	Brain Substantia Nigra	brain
7	chr6:163612400-163614000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:163612400-163614200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:163612400-163614600	Enhancers	Brain Angular Gyrus	brain
10	chr6:163612400-163615200	Enhancers	Fetal Muscle Trunk	muscle
11	chr6:163612400-163616000	Enhancers	Brain Anterior Caudate	brain
12	chr6:163612600-163614000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:163612800-163614000	Enhancers	Brain Germinal Matrix	brain
14	chr6:163612800-163614000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:163612800-163614200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:163613000-163614600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:163613200-163616400	Enhancers	Brain Hippocampus Middle	brain
18	chr6:163613800-163614000	Enhancers	Left Ventricle	heart
19	chr6:163613800-163614000	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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