Variant report

Variant	rs154199
Chromosome Location	chr5:97971735-97971736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs152988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs160719	1.00[AMR][1000 genomes]
rs460576	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016611	chr5:97873846-98035559	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv537816	chr5:97873846-98035559	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029509	chr5:97888644-98040172	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv882413	chr5:97918829-98022320	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1832089	chr5:97934125-97976039	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97967400-97975000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:97969800-97972000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97970000-97972000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:97970400-97972000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr5:97970400-97972000	Enhancers	Fetal Intestine Large	intestine
6	chr5:97970600-97971800	Enhancers	Fetal Intestine Small	intestine
7	chr5:97970600-97971800	Enhancers	NHLF	lung
8	chr5:97970800-97971800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr5:97970800-97971800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr5:97970800-97971800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:97970800-97971800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:97970800-97971800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:97970800-97972000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr5:97970800-97972000	Enhancers	NHDF-Ad	bronchial
15	chr5:97971000-97971800	Enhancers	Fetal Stomach	stomach
16	chr5:97971000-97971800	Enhancers	HSMM	muscle
17	chr5:97971000-97972000	Enhancers	Osteobl	bone
18	chr5:97971200-97971800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:97971200-97971800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:97971200-97971800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr5:97971200-97971800	Enhancers	HSMMtube	muscle
22	chr5:97971200-97972000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr5:97971200-97972000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:97971200-97972000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:97971200-97972000	Enhancers	Small Intestine	intestine
26	chr5:97971400-97971800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:97971400-97971800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:97971400-97971800	Enhancers	Adipose Nuclei	Adipose
29	chr5:97971400-97972000	Enhancers	H9 Cell Line	embryonic stem cell
30	chr5:97971400-97972000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr5:97971600-97971800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr5:97971600-97974000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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