Variant report

Variant	rs154307
Chromosome Location	chr14:79341891-79341892
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs150782	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154306	1.00[YRI][hapmap]
rs154308	1.00[AMR][1000 genomes]
rs154309	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154315	1.00[YRI][hapmap]
rs2964903	1.00[AMR][1000 genomes]
rs31358	1.00[AMR][1000 genomes]
rs31359	1.00[AMR][1000 genomes]
rs31360	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79337400-79342400	Weak transcription	Fetal Brain Female	brain
2	chr14:79341000-79342200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:79341000-79342600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr14:79341000-79342600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr14:79341000-79342800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr14:79341200-79342600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:79341400-79343000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr14:79341600-79342000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:79341600-79343200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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