Variant report
| Variant | rs154327 |
|---|---|
| Chromosome Location | chr14:79401845-79401846 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr14:79400770..79402966-chr14:79404628..79406999,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs154301 | 1.00[YRI][hapmap] |
| rs154302 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs154321 | 1.00[YRI][hapmap] |
| rs154322 | 1.00[YRI][hapmap] |
| rs154332 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs154335 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs154339 | 1.00[AMR][1000 genomes] |
| rs154375 | 1.00[YRI][hapmap] |
| rs31350 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs31364 | 0.83[AFR][1000 genomes] |
| rs31365 | 0.83[AFR][1000 genomes] |
| rs31366 | 0.83[AFR][1000 genomes] |
| rs31435 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs31440 | 0.87[AFR][1000 genomes] |
| rs39894 | 1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832838 | chr14:79306627-79445382 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 2 | nsv1048274 | chr14:79323592-79417906 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv917249 | chr14:79388181-79574717 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
