Variant report

Variant	rs154377
Chromosome Location	chr14:79384064-79384065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs154302	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154322	1.00[YRI][hapmap]
rs154332	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154335	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs154339	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs31350	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs31364	1.00[YRI][hapmap]
rs31365	1.00[YRI][hapmap]
rs31366	1.00[YRI][hapmap]
rs31367	1.00[YRI][hapmap]
rs31435	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832838	chr14:79306627-79445382	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1048274	chr14:79323592-79417906	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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