Variant report

Variant	rs1544488
Chromosome Location	chr14:72565482-72565483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2190631	0.85[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2239264	0.83[JPT][hapmap]
rs2283418	0.86[CHD][hapmap]
rs7140634	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7141268	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs8003328	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs956947	0.85[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72560600-72566600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72563200-72567400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:72563400-72565600	Enhancers	Right Ventricle	heart
4	chr14:72564600-72566000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:72564800-72565600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:72564800-72566000	Enhancers	Brain Germinal Matrix	brain
7	chr14:72565200-72569800	Weak transcription	Adipose Nuclei	Adipose
8	chr14:72565200-72569800	Weak transcription	Left Ventricle	heart
9	chr14:72565200-72569800	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links