Variant report

Variant	rs1546084
Chromosome Location	chr6:119062475-119062476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119060949..119064802-chr6:119066880..119068506,4	K562	blood:
2	chr6:119060047..119062597-chr6:119065156..119068895,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1546085	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1619049	0.86[EUR][1000 genomes]
rs1771746	0.91[EUR][1000 genomes]
rs72964971	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9481854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489512	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489516	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020463	chr6:118593028-119146363	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1025403	chr6:118635123-119122551	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1027444	chr6:118687556-119121660	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv538428	chr6:118687556-119121660	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949321	chr6:118692304-119137658	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv604556	chr6:118722589-119065365	Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv948980	chr6:118772508-119137658	Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv604559	chr6:118786486-119113317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv1020405	chr6:118786586-119241006	ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
10	nsv830788	chr6:119014021-119143652	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1023826	chr6:119026481-119221408	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv464030	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470855	chr6:119043898-119080379	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv604560	chr6:119043898-119080379	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv886568	chr6:119044453-119132164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
16	nsv886569	chr6:119055873-119132164	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119056600-119067400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:119056600-119069000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:119056800-119065400	Weak transcription	Fetal Thymus	thymus
4	chr6:119056800-119069800	Weak transcription	Pancreas	Pancrea
5	chr6:119058200-119068800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:119060200-119067400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:119060200-119069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:119060600-119064800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:119060600-119065600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:119061400-119064800	Weak transcription	Fetal Lung	lung
11	chr6:119061400-119069200	Weak transcription	Brain Substantia Nigra	brain
12	chr6:119061600-119064800	Weak transcription	HSMMtube	muscle
13	chr6:119061600-119065000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:119061800-119064800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:119061800-119064800	Weak transcription	NH-A	brain
16	chr6:119061800-119065000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr6:119061800-119067000	Weak transcription	Dnd41	blood
18	chr6:119062000-119064600	Weak transcription	HSMM	muscle
19	chr6:119062000-119064800	Weak transcription	Fetal Heart	heart
20	chr6:119062000-119064800	Weak transcription	NHDF-Ad	bronchial
21	chr6:119062000-119065400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:119062000-119066000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:119062000-119066200	Weak transcription	K562	blood
24	chr6:119062000-119066200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr6:119062000-119067400	Weak transcription	Fetal Brain Male	brain
26	chr6:119062000-119070200	Weak transcription	Fetal Brain Female	brain
27	chr6:119062200-119064000	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:119062200-119067000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:119062400-119065200	Weak transcription	Stomach Mucosa	stomach
30	chr6:119062400-119066200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:119062400-119066400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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