Variant report

Variant	rs154642
Chromosome Location	chr5:106798189-106798190
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106796505..106798929-chr5:107006795..107009330,2	MCF-7	breast:
2	chr5:106796368..106798711-chr5:106802191..106804169,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs115779	0.83[AMR][1000 genomes]
rs149444	0.89[AFR][1000 genomes]
rs152592	0.81[AMR][1000 genomes]
rs152598	0.81[AMR][1000 genomes]
rs152601	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs153686	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv462379	chr5:106789764-106806438	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv471037	chr5:106789764-106806438	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv599334	chr5:106789764-106806438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106789600-106800000	Weak transcription	Aorta	Aorta
2	chr5:106791000-106801400	Weak transcription	Right Atrium	heart
3	chr5:106792600-106800000	Weak transcription	Fetal Lung	lung
4	chr5:106792600-106800200	Weak transcription	Fetal Stomach	stomach
5	chr5:106792600-106801600	Weak transcription	HSMM	muscle
6	chr5:106792800-106799800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr5:106792800-106801000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:106792800-106804800	Weak transcription	Esophagus	oesophagus
9	chr5:106793800-106799600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:106794800-106798400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr5:106795400-106798800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:106795800-106802000	Weak transcription	Right Ventricle	heart
13	chr5:106796000-106798400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:106796000-106798800	Enhancers	NHEK	skin
15	chr5:106796000-106799000	Enhancers	HMEC	breast
16	chr5:106796200-106798400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:106796400-106798200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:106796400-106798400	Enhancers	Fetal Kidney	kidney
19	chr5:106796600-106798800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:106796600-106800000	Weak transcription	GM12878-XiMat	blood
21	chr5:106797000-106798600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr5:106797200-106798400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:106797200-106798600	Flanking Active TSS	A549	lung
24	chr5:106797200-106799600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:106797200-106799600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:106797200-106800000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:106797400-106798200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:106797400-106799600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr5:106797400-106799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:106797400-106800000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr5:106797600-106798600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:106797600-106799400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr5:106797800-106798800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr5:106797800-106798800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:106797800-106804600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr5:106798000-106798200	Weak transcription	Fetal Heart	heart
37	chr5:106798000-106799600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:106798000-106799600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:106798000-106800000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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