Variant report

Variant	rs1546768
Chromosome Location	chr7:109189816-109189817
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12111950	0.82[ASN][1000 genomes]
rs12705602	0.82[ASN][1000 genomes]
rs12705604	0.82[ASN][1000 genomes]
rs12705614	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13224726	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13227135	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13241557	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34823217	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs954483	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1546768	DLD	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109187800-109191600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:109187800-109192200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:109187800-109198000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:109188000-109199200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:109188000-109211000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:109188800-109191200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr7:109189000-109191600	Enhancers	Brain Germinal Matrix	brain
8	chr7:109189200-109192400	Weak transcription	Aorta	Aorta
9	chr7:109189400-109192000	Enhancers	Fetal Brain Male	brain
10	chr7:109189600-109190000	Active TSS	Adipose Nuclei	Adipose
11	chr7:109189600-109190000	Active TSS	Fetal Lung	lung
12	chr7:109189600-109190200	Active TSS	Brain Anterior Caudate	brain
13	chr7:109189600-109190200	Active TSS	Right Atrium	heart
14	chr7:109189800-109190000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:109189800-109190400	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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