Variant report

Variant	rs1548141
Chromosome Location	chr3:97942706-97942707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:158)

rs_ID	r²[population]
rs1024053	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1024056	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11706357	0.80[AMR][1000 genomes]
rs11706390	0.81[AMR][1000 genomes]
rs11710803	0.83[EUR][1000 genomes]
rs11715052	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11715218	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11718318	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11720035	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11720576	0.83[EUR][1000 genomes]
rs11914600	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11923541	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12330386	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12489167	0.81[AMR][1000 genomes]
rs12489398	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12490755	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12498051	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12695682	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12695683	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12695684	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13059290	0.83[AMR][1000 genomes]
rs13060569	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13060763	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13061180	0.83[AMR][1000 genomes]
rs13061364	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13080640	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13080694	0.86[ASN][1000 genomes]
rs13081420	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13084823	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13084986	0.83[AMR][1000 genomes]
rs13088168	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13099950	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13321188	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13433842	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13433847	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1391151	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1391152	0.89[ASN][1000 genomes]
rs1532465	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1548142	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1587280	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16839400	0.83[EUR][1000 genomes]
rs16839427	0.89[ASN][1000 genomes]
rs16839430	0.89[ASN][1000 genomes]
rs16839434	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16839438	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16839446	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1846078	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1908997	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1908998	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1908999	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1960452	0.83[EUR][1000 genomes]
rs2047389	0.83[EUR][1000 genomes]
rs2047390	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2047391	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2047392	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2047393	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2088408	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2291810	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2316299	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2316300	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28481861	0.83[EUR][1000 genomes]
rs28484994	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28678410	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2873119	0.83[EUR][1000 genomes]
rs2873120	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2873121	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34111209	0.83[EUR][1000 genomes]
rs34127316	0.89[ASN][1000 genomes]
rs34448974	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34573833	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34795831	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34826958	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34859603	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34918234	0.83[EUR][1000 genomes]
rs35025561	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35122376	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35200215	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35212708	0.87[ASN][1000 genomes]
rs35221063	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35327048	0.83[EUR][1000 genomes]
rs35907125	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4264769	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4286458	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4365665	0.87[AMR][1000 genomes]
rs4452365	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4463010	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4463011	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4464499	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4482695	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4546179	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4574333	0.89[ASN][1000 genomes]
rs4621367	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4624601	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857344	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4857345	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857346	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857347	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857348	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857349	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857350	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857351	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4857354	0.83[EUR][1000 genomes]
rs5000372	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs5000376	0.84[EUR][1000 genomes]
rs5000377	0.84[EUR][1000 genomes]
rs56206401	0.80[AMR][1000 genomes]
rs58188940	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62267190	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62267191	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62267192	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62267806	0.80[AMR][1000 genomes]
rs62267815	0.83[AMR][1000 genomes]
rs6414338	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6414339	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6439682	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6439684	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6439696	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66498739	0.89[ASN][1000 genomes]
rs6765411	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6765598	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6765605	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6765940	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6766035	0.83[AMR][1000 genomes]
rs6766382	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6766605	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6766681	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6768197	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6769416	0.81[AMR][1000 genomes]
rs6770869	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6771099	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6776813	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6791813	0.83[AMR][1000 genomes]
rs6794694	0.81[AMR][1000 genomes]
rs6806695	0.80[AMR][1000 genomes]
rs68091373	0.81[AMR][1000 genomes]
rs6809326	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6809422	0.81[AMR][1000 genomes]
rs6809633	0.81[AMR][1000 genomes]
rs68151968	0.80[EUR][1000 genomes]
rs72931007	0.89[ASN][1000 genomes]
rs7426834	0.86[AMR][1000 genomes]
rs7430016	0.81[EUR][1000 genomes]
rs7633244	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7634043	0.83[EUR][1000 genomes]
rs7634063	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7634274	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7634735	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7640900	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7645384	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7645400	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7647986	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9812143	0.90[AMR][1000 genomes]
rs9824733	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9840421	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9848264	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9853761	0.83[EUR][1000 genomes]
rs9879316	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs995557	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv963576	chr3:97825434-98041343	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv834773	chr3:97855362-98043888	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv877210	chr3:97866177-97992964	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv870074	chr3:97903273-97948850	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv2763288	chr3:97908670-97947253	Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv432462	chr3:97918267-98001710	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv877211	chr3:97919363-97958280	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv591063	chr3:97924688-97958280	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv591064	chr3:97931105-97958280	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv877212	chr3:97931105-98033400	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
15	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1004762	chr3:97935701-98000227	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv1008569	chr3:97937168-97983117	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:97942400-97943400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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