Variant report

Variant	rs1548202
Chromosome Location	chr12:73840193-73840194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10748229	0.85[EUR][1000 genomes]
rs10748230	0.85[EUR][1000 genomes]
rs10748231	0.84[EUR][1000 genomes]
rs10748232	0.85[EUR][1000 genomes]
rs10785026	0.81[EUR][1000 genomes]
rs10785027	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10785030	0.83[EUR][1000 genomes]
rs10879621	0.81[EUR][1000 genomes]
rs11179673	0.92[EUR][1000 genomes]
rs11179674	0.80[EUR][1000 genomes]
rs11179697	0.87[EUR][1000 genomes]
rs12304376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12368237	0.94[EUR][1000 genomes]
rs1443737	0.87[EUR][1000 genomes]
rs1520550	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520552	0.83[EUR][1000 genomes]
rs1520565	0.85[EUR][1000 genomes]
rs1520568	0.82[EUR][1000 genomes]
rs1543207	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545292	0.94[EUR][1000 genomes]
rs1851041	0.85[EUR][1000 genomes]
rs1851042	0.83[EUR][1000 genomes]
rs1915285	0.85[EUR][1000 genomes]
rs1915286	0.85[EUR][1000 genomes]
rs2139680	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34249066	0.83[EUR][1000 genomes]
rs4760887	0.85[EUR][1000 genomes]
rs4882911	0.83[EUR][1000 genomes]
rs6421241	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6582148	1.00[ASN][1000 genomes]
rs6582160	0.83[EUR][1000 genomes]
rs6582165	0.82[EUR][1000 genomes]
rs7295470	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7297256	0.80[EUR][1000 genomes]
rs7298973	0.85[EUR][1000 genomes]
rs7301536	0.85[EUR][1000 genomes]
rs7306348	0.81[EUR][1000 genomes]
rs7310312	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7316126	0.89[EUR][1000 genomes]
rs7485858	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7489254	0.85[EUR][1000 genomes]
rs7953263	0.81[EUR][1000 genomes]
rs7955005	0.83[EUR][1000 genomes]
rs7963550	0.85[EUR][1000 genomes]
rs7964705	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7974278	0.91[EUR][1000 genomes]
rs7975033	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7976937	0.90[EUR][1000 genomes]
rs7977492	0.83[EUR][1000 genomes]
rs7978802	0.83[EUR][1000 genomes]
rs952523	0.85[EUR][1000 genomes]
rs952524	0.85[EUR][1000 genomes]
rs965542	0.82[EUR][1000 genomes]
rs988541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899274	chr12:73510254-73875790	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv899277	chr12:73773886-73875790	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv832457	chr12:73784588-74011986	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1043656	chr12:73795943-74341905	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv541536	chr12:73795943-74341905	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:73839200-73840200	Enhancers	Primary hematopoietic stem cells	blood
2	chr12:73839600-73840200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr12:73839800-73840200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr12:73840000-73840200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr12:73840000-73843000	Enhancers	Primary B cells from cord blood	blood

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