Variant report

Variant	rs1548578
Chromosome Location	chr7:19035058-19035059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17150264	1.00[AMR][1000 genomes]
rs2526623	1.00[AMR][1000 genomes]
rs2526627	1.00[AMR][1000 genomes]
rs2526631	1.00[AMR][1000 genomes]
rs2717331	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv887817	chr7:19021592-19100076	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19013800-19040800	Weak transcription	Aorta	Aorta
2	chr7:19015800-19042400	Weak transcription	Left Ventricle	heart
3	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:19030600-19035600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19031800-19035600	Weak transcription	Brain Germinal Matrix	brain
6	chr7:19032200-19035600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:19033000-19038000	Weak transcription	Primary B cells from cord blood	blood
8	chr7:19033600-19035600	Enhancers	NHDF-Ad	bronchial
9	chr7:19033600-19035800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:19033800-19038800	Weak transcription	Placenta	Placenta
11	chr7:19034000-19035400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:19034000-19035600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr7:19034000-19035600	Weak transcription	Osteobl	bone
14	chr7:19034600-19035200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr7:19034800-19035200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:19034800-19035200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:19034800-19035600	Active TSS	Stomach Smooth Muscle	stomach
18	chr7:19034800-19035600	Active TSS	NHLF	lung
19	chr7:19034800-19036000	Enhancers	Adipose Nuclei	Adipose
20	chr7:19034800-19036200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:19034800-19041200	Weak transcription	HSMM	muscle
22	chr7:19035000-19036000	Enhancers	Fetal Stomach	stomach
23	chr7:19035000-19036200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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